U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCAF8 SR-related CTD associated factor 8 [ Miniopterus natalensis ]

Gene ID: 107527820, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SCAF8
Gene description
SR-related CTD associated factor 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Miniopterus natalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Miniopteridae; Miniopterus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Mnat.v1 (GCF_001595765.1) Unplaced Scaffold NW_015504297.1 (393932..532794)

NW_015504297.1Genomic Context describing neighboring genes Neighboring gene interaction protein for cytohesin exchange factors 1 Neighboring gene CNKSR family member 3 Neighboring gene uncharacterized LOC107527827 Neighboring gene uncharacterized LOC107527825 Neighboring gene TIAM Rac1 associated GEF 2 Neighboring gene transcription factor B1, mitochondrial

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015504297.1 Unplaced Scaffold Reference Mnat.v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SCAF8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Miniopterus natalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnat.v1

Genomic

  1. NW_015504297.1 Reference Mnat.v1

    Range
    393932..532794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016200673.1 → XP_016056159.1  protein SCAF8 isoform X1

    Conserved Domains (5) summary
    pfam12039
    Location:569 → 646
    DUF3525; Protein of unknown function (DUF3525)
    COG0724
    Location:469 → 548
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:4 → 121
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:471 → 549
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam13634
    Location:814 → 903
    Nucleoporin_FG; Nucleoporin FG repeat region

  2. XM_016200674.1 → XP_016056160.1  protein SCAF8 isoform X1

    Conserved Domains (5) summary
    pfam12039
    Location:569 → 646
    DUF3525; Protein of unknown function (DUF3525)
    COG0724
    Location:469 → 548
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:4 → 121
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:471 → 549
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam13634
    Location:814 → 903
    Nucleoporin_FG; Nucleoporin FG repeat region

  3. XM_016200672.1 → XP_016056158.1  protein SCAF8 isoform X1

    Conserved Domains (5) summary
    pfam12039
    Location:569 → 646
    DUF3525; Protein of unknown function (DUF3525)
    COG0724
    Location:469 → 548
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:4 → 121
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:471 → 549
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam13634
    Location:814 → 903
    Nucleoporin_FG; Nucleoporin FG repeat region

  4. XM_016200678.1 → XP_016056164.1  protein SCAF8 isoform X3

    Conserved Domains (5) summary
    pfam12039
    Location:568 → 645
    DUF3525; Protein of unknown function (DUF3525)
    COG0724
    Location:468 → 547
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:4 → 121
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:470 → 548
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam13634
    Location:813 → 902
    Nucleoporin_FG; Nucleoporin FG repeat region

  5. XM_016200675.1 → XP_016056161.1  protein SCAF8 isoform X2

    Conserved Domains (5) summary
    pfam12039
    Location:568 → 645
    DUF3525; Protein of unknown function (DUF3525)
    COG0724
    Location:468 → 547
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:4 → 120
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:470 → 548
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam13634
    Location:813 → 902
    Nucleoporin_FG; Nucleoporin FG repeat region

RNA

  1. XR_001602307.1 RNA Sequence

  2. XR_001602308.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.