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CDH1 cadherin 1 [ Rousettus aegyptiacus (Egyptian rousette) ]

Gene ID: 107520648, updated on 30-Mar-2024

Summary

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Gene symbol
CDH1
Gene description
cadherin 1
Locus tag
HJG63_002552
Gene type
protein coding
RefSeq status
MODEL
Organism
Rousettus aegyptiacus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416289.1 (13086273..13149799, complement)
100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015492977.1 (2353089..2416637)

NW_023416289.1Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 6 homolog Neighboring gene putative monooxygenase p33MONOX Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118611350 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene cadherin 3 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRouAeg1.p

Genomic

  1. NW_023416289.1 Reference mRouAeg1.p

    Range
    13086273..13149799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036231436.1 → XP_036087329.1  cadherin-1 isoform X3

    Conserved Domains (5) summary
    cd00031
    Location:163 → 263
    CA_like; Cadherin repeat-like domain
    cd11304
    Location:271 → 376
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:739 → 885
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:28 → 117
    Cadherin_pro; Cadherin prodomain like
    cl29226
    Location:611 → 691
    Cadherin; Cadherin domain

  2. XM_016164652.2 → XP_016020138.2  cadherin-1 isoform X2

    UniProtKB/TrEMBL
    A0A7J8CEL4
    Conserved Domains (5) summary
    cd00031
    Location:164 → 264
    CA_like; Cadherin repeat-like domain
    cd11304
    Location:272 → 377
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:740 → 886
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:29 → 118
    Cadherin_pro; Cadherin prodomain like
    cl29226
    Location:612 → 692
    Cadherin; Cadherin domain

  3. XM_036231437.1 → XP_036087330.1  cadherin-1 isoform X4

    Conserved Domains (4) summary
    cd00031
    Location:67 → 167
    CA_like; Cadherin repeat-like domain
    cd11304
    Location:175 → 280
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:643 → 789
    Cadherin_C; Cadherin cytoplasmic region
    cl29226
    Location:515 → 595
    Cadherin; Cadherin domain

  4. XM_036231435.1 → XP_036087328.1  cadherin-1 isoform X1

    Conserved Domains (5) summary
    cd00031
    Location:181 → 281
    CA_like; Cadherin repeat-like domain
    cd11304
    Location:289 → 394
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:757 → 903
    Cadherin_C; Cadherin cytoplasmic region
    cl07391
    Location:74 → 135
    Cadherin_pro; Cadherin prodomain like
    cl29226
    Location:629 → 709
    Cadherin; Cadherin domain
Nucleotide Protein
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