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SCAF8 SR-related CTD associated factor 8 [ Rousettus aegyptiacus (Egyptian rousette) ]

Gene ID: 107516509, updated on 30-Mar-2024

Summary

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Gene symbol
SCAF8
Gene description
SR-related CTD associated factor 8
Locus tag
HJG63_017198
Gene type
protein coding
RefSeq status
MODEL
Organism
Rousettus aegyptiacus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416284.1 (177104360..177295104)
100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015494624.1 (1223135..1281029)

NW_023416284.1Genomic Context describing neighboring genes Neighboring gene interaction protein for cytohesin exchange factors 1 Neighboring gene 5S ribosomal RNA Neighboring gene CNKSR family member 3 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene TIAM Rac1 associated GEF 2 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SR-related and CTD-associated factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRouAeg1.p

Genomic

  1. NW_023416284.1 Reference mRouAeg1.p

    Range
    177104360..177295104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036223007.1 → XP_036078900.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KG37
    Conserved Domains (3) summary
    PHA03247
    Location:737 → 1100
    PHA03247; large tegument protein UL36; Provisional
    cd17004
    Location:32 → 156
    CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
    cd12462
    Location:496 → 574
    RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

  2. XM_036223000.1 → XP_036078893.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KG37
    Conserved Domains (3) summary
    PHA03247
    Location:737 → 1100
    PHA03247; large tegument protein UL36; Provisional
    cd17004
    Location:32 → 156
    CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
    cd12462
    Location:496 → 574
    RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

  3. XM_036223014.1 → XP_036078907.1  SR-related and CTD-associated factor 8 isoform X2

    UniProtKB/TrEMBL
    A0A7J8KG37
    Conserved Domains (3) summary
    PHA03247
    Location:736 → 1099
    PHA03247; large tegument protein UL36; Provisional
    cd17004
    Location:32 → 156
    CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
    cd12462
    Location:495 → 573
    RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

  4. XM_036223018.1 → XP_036078911.1  SR-related and CTD-associated factor 8 isoform X3

    UniProtKB/TrEMBL
    A0A7J8KG37, A0A7J8KGD2
    Conserved Domains (3) summary
    PHA03247
    Location:716 → 1079
    PHA03247; large tegument protein UL36; Provisional
    cd17004
    Location:5 → 135
    CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
    cd12462
    Location:475 → 553
    RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

  5. XM_036223022.1 → XP_036078915.1  SR-related and CTD-associated factor 8 isoform X4

    UniProtKB/TrEMBL
    A0A7J8KG37, A0A7J8KG71
    Conserved Domains (3) summary
    PHA03247
    Location:691 → 1054
    PHA03247; large tegument protein UL36; Provisional
    cd12462
    Location:450 → 528
    RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    cl02544
    Location:1 → 110
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

RNA

  1. XR_004951416.1 RNA Sequence

  2. XR_004951418.1 RNA Sequence

  3. XR_004951421.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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