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TRERF1 transcriptional regulating factor 1 [ Rousettus aegyptiacus (Egyptian rousette) ]

Gene ID: 107501941, updated on 30-Mar-2024

Summary

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Gene symbol
TRERF1
Gene description
transcriptional regulating factor 1
Locus tag
HJG63_019829
Gene type
protein coding
RefSeq status
MODEL
Organism
Rousettus aegyptiacus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416284.1 (98986634..99173273, complement)
100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015495132.1 (2608751..2795883)

NW_023416284.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene mitochondrial ribosomal protein S10 Neighboring gene 60S ribosomal protein L28-like Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional-regulating factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRouAeg1.p

Genomic

  1. NW_023416284.1 Reference mRouAeg1.p

    Range
    98986634..99173273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016128553.2 → XP_015984039.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. XM_016128557.2 → XP_015984043.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  3. XM_016128545.2 → XP_015984031.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  4. XM_036218082.1 → XP_036073975.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  5. XM_016128544.2 → XP_015984030.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  6. XM_016128569.2 → XP_015984055.2  transcriptional-regulating factor 1 isoform X12

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (4) summary
    sd00017
    Location:934 → 956
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:701 → 755
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:809 → 853
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  7. XM_016128568.2 → XP_015984054.2  transcriptional-regulating factor 1 isoform X11

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:701 → 755
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:809 → 853
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  8. XM_016128563.2 → XP_015984049.2  transcriptional-regulating factor 1 isoform X6

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:758 → 812
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:866 → 910
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  9. XM_016128564.2 → XP_015984050.2  transcriptional-regulating factor 1 isoform X7

    UniProtKB/TrEMBL
    A0A7J8KIQ8, A0A7J8KIS9
    Conserved Domains (4) summary
    sd00017
    Location:1014 → 1036
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:781 → 835
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:889 → 933
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  10. XM_016128561.2 → XP_015984047.2  transcriptional-regulating factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (4) summary
    sd00018
    Location:1116 → 1138
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:781 → 835
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:889 → 933
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  11. XM_016128566.2 → XP_015984052.2  transcriptional-regulating factor 1 isoform X10

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (4) summary
    sd00018
    Location:1037 → 1059
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  12. XM_016128565.2 → XP_015984051.2  transcriptional-regulating factor 1 isoform X9

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  13. XM_016128562.2 → XP_015984048.2  transcriptional-regulating factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A7J8KIS9, A0A7J8KIY7
    Conserved Domains (4) summary
    sd00017
    Location:1034 → 1056
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  14. XM_016128560.2 → XP_015984046.2  transcriptional-regulating factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (4) summary
    sd00018
    Location:1117 → 1139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  15. XM_036218127.1 → XP_036074020.1  transcriptional-regulating factor 1 isoform X8

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (4) summary
    sd00018
    Location:1056 → 1078
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  16. XM_016128559.2 → XP_015984045.2  transcriptional-regulating factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (4) summary
    sd00017
    Location:1053 → 1075
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  17. XM_016128542.2 → XP_015984028.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  18. XM_016128556.2 → XP_015984042.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  19. XM_016128549.2 → XP_015984035.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  20. XM_016128543.2 → XP_015984029.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  21. XM_036218094.1 → XP_036073987.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  22. XM_016128554.2 → XP_015984040.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  23. XM_016128555.2 → XP_015984041.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  24. XM_016128547.2 → XP_015984033.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  25. XM_036218057.1 → XP_036073950.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  26. XM_036218061.1 → XP_036073954.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  27. XM_016128548.2 → XP_015984034.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  28. XM_016128546.2 → XP_015984032.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  29. XM_016128550.2 → XP_015984036.2  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7J8KIS9
    Conserved Domains (3) summary
    pfam01448
    Location:801 → 855
    ELM2; ELM2 domain
    pfam13912
    Location:517 → 537
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909 → 953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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