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RARB retinoic acid receptor beta [ Rousettus aegyptiacus (Egyptian rousette) ]

Gene ID: 107500055, updated on 30-Mar-2024

Summary

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Gene symbol
RARB
Gene description
retinoic acid receptor beta
Locus tag
HJG63_016403
Gene type
protein coding
RefSeq status
MODEL
Organism
Rousettus aegyptiacus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416307.1 (139181082..139828581)
100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015495021.1 (1332745..1978701)

NW_023416307.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107500061 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene DNA topoisomerase II beta Neighboring gene 5S ribosomal RNA Neighboring gene N-glycanase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRouAeg1.p

Genomic

  1. NW_023416307.1 Reference mRouAeg1.p

    Range
    139181082..139828581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016124866.2 → XP_015980352.1  retinoic acid receptor beta isoform X1

    UniProtKB/TrEMBL
    A0A7J8HV26
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_016124868.2 → XP_015980354.1  retinoic acid receptor beta isoform X1

    UniProtKB/TrEMBL
    A0A7J8HV26
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  3. XM_016124867.2 → XP_015980353.1  retinoic acid receptor beta isoform X1

    UniProtKB/TrEMBL
    A0A7J8HV26
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_016124865.2 → XP_015980351.1  retinoic acid receptor beta isoform X1

    UniProtKB/TrEMBL
    A0A7J8HV26
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  5. XM_016124873.2 → XP_015980359.1  retinoic acid receptor beta isoform X3

    UniProtKB/TrEMBL
    A0A7J8HUA1
    Conserved Domains (2) summary
    cd06937
    Location:67 → 297
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cl02596
    Location:1 → 47
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  6. XM_016124874.2 → XP_015980360.1  retinoic acid receptor beta isoform X3

    UniProtKB/TrEMBL
    A0A7J8HUA1
    Conserved Domains (2) summary
    cd06937
    Location:67 → 297
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cl02596
    Location:1 → 47
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  7. XM_016124875.2 → XP_015980361.1  retinoic acid receptor beta isoform X3

    UniProtKB/TrEMBL
    A0A7J8HUA1
    Conserved Domains (2) summary
    cd06937
    Location:67 → 297
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cl02596
    Location:1 → 47
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  8. XM_016124869.2 → XP_015980355.1  retinoic acid receptor beta isoform X2

    UniProtKB/TrEMBL
    A0A7J8HV30, A0A7J8HVH5
    Conserved Domains (2) summary
    cd06937
    Location:179 → 409
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:75 → 159
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  9. XM_016124870.2 → XP_015980356.1  retinoic acid receptor beta isoform X3

    UniProtKB/TrEMBL
    A0A7J8HUA1
    Conserved Domains (2) summary
    cd06937
    Location:67 → 297
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cl02596
    Location:1 → 47
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  10. XM_016124872.2 → XP_015980358.1  retinoic acid receptor beta isoform X3

    UniProtKB/TrEMBL
    A0A7J8HUA1
    Conserved Domains (2) summary
    cd06937
    Location:67 → 297
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cl02596
    Location:1 → 47
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
Nucleotide Protein
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