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LOC107397108 SRY-box transcription factor 13 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107397108, updated on 3-Apr-2024

Summary

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Gene symbol
LOC107397108
Gene description
SRY-box transcription factor 13
See related
Ensembl:ENSNFUG00015020222
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
sox13
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026540078.1 (186640..263026, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) Unplaced Scaffold NW_015444172.1 (47609..124064, complement)

NW_026540078.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 41 member 1 Neighboring gene ethanolamine kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-13
Names
SRY-box 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026540078.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    186640..263026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015977012.2 → XP_015832498.1  transcription factor SOX-13 isoform X1

    UniProtKB/TrEMBL
    A0A1A8UIV3, A0A8C6PDI7
    Related
    ENSNFUP00015042171.1
    Conserved Domains (1) summary
    cd01388
    Location:417 → 488
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  2. XM_054734908.1 → XP_054590883.1  transcription factor SOX-13 isoform X3

  3. XM_054734907.1 → XP_054590882.1  transcription factor SOX-13 isoform X2

  4. XM_015977011.2 → XP_015832497.1  transcription factor SOX-13 isoform X1

    UniProtKB/TrEMBL
    A0A1A8UIV3, A0A8C6PDI7
    Conserved Domains (1) summary
    cd01388
    Location:417 → 488
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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