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si:zfos-588f8.1 unconventional myosin-IXb [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107393114, updated on 3-Apr-2024

Summary

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Gene symbol
si:zfos-588f8.1
Gene description
unconventional myosin-IXb
See related
Ensembl:ENSNFUG00015025453
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
myo9b
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
45
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539929.1 (20857466..20911407, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr17 NC_029665.1 (23306566..23360991, complement)

NW_026539929.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129167823 Neighboring gene unconventional SNARE in the ER 1 homolog (S. cerevisiae) Neighboring gene sphingosine-1-phosphate receptor 4 Neighboring gene uncharacterized LOC107393116

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
unconventional myosin-IXb
Names
myosin IXB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539929.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    20857466..20911407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015971287.2 → XP_015826773.2  unconventional myosin-IXb isoform X2

  2. XM_015971286.2 → XP_015826772.2  unconventional myosin-IXb isoform X1

  3. XM_015971290.2 → XP_015826776.2  unconventional myosin-IXb isoform X5

  4. XM_015971288.2 → XP_015826774.2  unconventional myosin-IXb isoform X3

  5. XM_054752365.1 → XP_054608340.1  unconventional myosin-IXb isoform X7

  6. XM_015971289.2 → XP_015826775.2  unconventional myosin-IXb isoform X4

  7. XM_015971291.2 → XP_015826777.1  unconventional myosin-IXb isoform X6

    UniProtKB/TrEMBL
    A0A8C6Q7N3, A0A8C6Q803
    Related
    ENSNFUP00015054904.1
    Conserved Domains (6) summary
    smart00015
    Location:1039 → 1061
    IQ; Calmodulin-binding motif
    smart00242
    Location:154 → 987
    MYSc; Myosin. Large ATPases
    cd00029
    Location:1715 → 1763
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cd01385
    Location:174 → 982
    MYSc_Myo9; class IX myosin, motor domain
    cl00155
    Location:27 → 125
    UBQ; Ubiquitin-like proteins
    cl02570
    Location:1780 → 1965
    RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
Nucleotide Protein
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