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iqsec2b IQ motif and Sec7 domain ArfGEF 2b [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107390503, updated on 14-Mar-2024

Summary

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Gene symbol
iqsec2b
Gene description
IQ motif and Sec7 domain ArfGEF 2b
See related
Ensembl:ENSNFUG00015021046
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
iqsec2
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539923.1 (2602770..2657176, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr15 NC_029663.1 (2965316..3019256, complement)

NW_026539923.1Genomic Context describing neighboring genes Neighboring gene PDZ domain-containing protein 4 Neighboring gene lysine demethylase 5C Neighboring gene membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2 Neighboring gene G patch domain and KOW motifs

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
IQ motif and SEC7 domain-containing protein 1; IQ motif and SEC7 domain-containing protein 2
Names
IQ motif and Sec7 domain 2
IQ motif and Sec7 domain ArfGEF 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539923.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    2602770..2657176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054745652.1 → XP_054601627.1  IQ motif and SEC7 domain-containing protein 1 isoform X1

  2. XM_015967253.2 → XP_015822739.1  IQ motif and SEC7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1A8UYS4, A0A9D2XWP2
    Conserved Domains (2) summary
    pfam01369
    Location:700 → 888
    Sec7; Sec7 domain
    pfam16453
    Location:908 → 1045
    IQ_SEC7_PH; PH domain

  3. XM_054745653.1 → XP_054601628.1  IQ motif and SEC7 domain-containing protein 2 isoform X3

  4. XM_015967257.2 → XP_015822743.1  IQ motif and SEC7 domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C6PJ70, A0A9D3BIF5
    Conserved Domains (2) summary
    pfam01369
    Location:700 → 888
    Sec7; Sec7 domain
    pfam16453
    Location:908 → 1045
    IQ_SEC7_PH; PH domain
Nucleotide Protein
Heading Accession and Version

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