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ccdc40 coiled-coil domain 40 molecular ruler complex subunit [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107390155, updated on 14-Mar-2024

Summary

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Gene symbol
ccdc40
Gene description
coiled-coil domain 40 molecular ruler complex subunit
See related
Ensembl:ENSNFUG00015021946
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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See ccdc40 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539921.1 (8359382..8372172, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr02 NC_029650.1 (8727571..8740043, complement)

NW_026539921.1Genomic Context describing neighboring genes Neighboring gene neuronal pentraxin-1 Neighboring gene testis-expressed protein 2 Neighboring gene caspase recruitment domain family, member 14 Neighboring gene myeloid-associated differentiation marker homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cilium movement involved in determination of left/right asymmetry IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 40
Names
coiled-coil domain containing 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539921.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    8359382..8372172 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054743619.1 → XP_054599594.1  coiled-coil domain-containing protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A8C6VX32

  2. XM_054743620.1 → XP_054599595.1  coiled-coil domain-containing protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A9D2YNA0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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