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znf385b zinc finger protein 385B [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107389691, updated on 14-Mar-2024

Summary

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Gene symbol
znf385b
Gene description
zinc finger protein 385B
See related
Ensembl:ENSNFUG00015011988
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539924.1 (17044446..17115745, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr14 NC_029662.1 (19355171..19395370, complement)

NW_026539924.1Genomic Context describing neighboring genes Neighboring gene SEC14 and spectrin domains 1 Neighboring gene organic cation/carnitine transporter 2-like Neighboring gene CWC22 spliceosome associated protein homolog Neighboring gene uncharacterized LOC107389693 Neighboring gene uncharacterized LOC107372932

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 385B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539924.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    17044446..17115745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015965947.2 → XP_015821433.1  zinc finger protein 385B isoform X2

    UniProtKB/TrEMBL
    A0A1A8UNS8, A0A8C6LVY5
    Related
    ENSNFUP00015024760.1
    Conserved Domains (3) summary
    smart00451
    Location:50 → 79
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:368 → 390
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:431 → 455
    zf-met; Zinc-finger of C2H2 type

  2. XM_015965946.2 → XP_015821432.1  zinc finger protein 385B isoform X1

    UniProtKB/TrEMBL
    A0A1A7ZHJ8, A0A8C6LVY5
    Conserved Domains (3) summary
    smart00451
    Location:50 → 79
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:368 → 390
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:431 → 455
    zf-met; Zinc-finger of C2H2 type

  3. XM_015965949.2 → XP_015821435.1  zinc finger protein 385B isoform X4

    UniProtKB/TrEMBL
    A0A8C6LQA4, A0A9D2Y7H8
    Related
    ENSNFUP00015024775.1
    Conserved Domains (2) summary
    sd00020
    Location:249 → 271
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:312 → 336
    zf-met; Zinc-finger of C2H2 type

  4. XM_015965948.2 → XP_015821434.1  zinc finger protein 385B isoform X3

    UniProtKB/TrEMBL
    A0A8C6LXW3, A0A9D3BMF0
    Related
    ENSNFUP00015024783.1
    Conserved Domains (2) summary
    sd00020
    Location:281 → 303
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:344 → 368
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein
Heading Accession and Version

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