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zcchc4 zinc finger, CCHC domain containing 4 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107384507, updated on 14-Mar-2024

Summary

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Gene symbol
zcchc4
Gene description
zinc finger, CCHC domain containing 4
See related
Ensembl:ENSNFUG00015013521
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539915.1 (50070877..50085086)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr10 NC_029658.1 (234675..248918, complement)

NW_026539915.1Genomic Context describing neighboring genes Neighboring gene actin filament associated protein 1 Neighboring gene actin binding LIM protein family, member 2 Neighboring gene nuclear factor 7, ovary Neighboring gene galactose-3-O-sulfotransferase 4 Neighboring gene transmembrane 4 L six family member 21b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA (adenine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA N6-adenosine-methyltransferase ZCCHC4
Names
zinc finger CCHC-type containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539915.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    50070877..50085086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054735656.1 → XP_054591631.1  rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X3

  2. XM_054735654.1 → XP_054591629.1  rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X1

  3. XM_054735655.1 → XP_054591630.1  rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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