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relb v-rel avian reticuloendotheliosis viral oncogene homolog B [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107380281, updated on 14-Mar-2024

Summary

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Gene symbol
relb
Gene description
v-rel avian reticuloendotheliosis viral oncogene homolog B
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539919.1 (18971428..18981960)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr06 NC_029654.1 (22131736..22141499)

NW_026539919.1Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor B Neighboring gene CLPTM1 regulator of GABA type A receptor forward trafficking Neighboring gene mitochondrial ribosomal protein L28 Neighboring gene transfer RNA opal suppressor (anticodon UCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor RelB homolog; transcription factor RelB
Names
RELB proto-oncogene, NF-kB subunit
v-rel reticuloendotheliosis viral oncogene homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539919.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    18971428..18981960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015951447.2 → XP_015806933.1  transcription factor RelB homolog isoform X1

    UniProtKB/TrEMBL
    A0A9D3BSW7
    Conserved Domains (2) summary
    pfam16179
    Location:344 → 440
    RHD_dimer; Rel homology dimerization domain
    cl08275
    Location:162 → 336
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)

  2. XM_015951448.2 → XP_015806934.1  transcription factor RelB homolog isoform X2

    UniProtKB/TrEMBL
    A0A9D3BTE3
    Conserved Domains (2) summary
    pfam16179
    Location:343 → 439
    RHD_dimer; Rel homology dimerization domain
    cl08275
    Location:161 → 335
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)

  3. XM_015951449.2 → XP_015806935.1  transcription factor RelB isoform X3

    UniProtKB/TrEMBL
    A0A9D3BRX0
    Conserved Domains (2) summary
    pfam16179
    Location:241 → 337
    RHD_dimer; Rel homology dimerization domain
    cl08275
    Location:59 → 233
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)
Nucleotide Protein
Heading Accession and Version

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