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thumpd2 THUMP domain containing 2 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107375889, updated on 14-Mar-2024

Summary

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Gene symbol
thumpd2
Gene description
THUMP domain containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539927.1 (27686725..27694035)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr03 NC_029651.1 (29459928..29468791)

NW_026539927.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129166808 Neighboring gene uncharacterized LOC107375888 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539927.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    27686725..27694035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015944704.2 → XP_015800190.2  THUMP domain-containing protein 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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