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tbck TBC1 domain containing kinase [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107375269, updated on 3-Apr-2024

Summary

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Gene symbol
tbck
Gene description
TBC1 domain containing kinase
See related
Ensembl:ENSNFUG00015002157
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539921.1 (77562943..77621150)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr02 NC_029650.1 (86181445..86240145)

NW_026539921.1Genomic Context describing neighboring genes Neighboring gene dickkopf WNT signaling pathway inhibitor 2 Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1a Neighboring gene polyunsaturated fatty acid lipoxygenase ALOX15B Neighboring gene uncharacterized LOC129164472 Neighboring gene nephronectin a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TBC domain-containing protein kinase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539921.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    77562943..77621150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054744815.1 → XP_054600790.1  TBC domain-containing protein kinase-like protein isoform X2

  2. XM_015943704.2 → XP_015799190.1  TBC domain-containing protein kinase-like protein isoform X1

    UniProtKB/TrEMBL
    A0A1A8A977, A0A8C6KHN1
    Related
    ENSNFUP00015004443.1
    Conserved Domains (3) summary
    smart00164
    Location:466 → 670
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cl00125
    Location:761 → 876
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    cl21453
    Location:43 → 272
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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