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edf1 endothelial differentiation-related factor 1 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107374672, updated on 14-Mar-2024

Summary

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Gene symbol
edf1
Gene description
endothelial differentiation-related factor 1
See related
Ensembl:ENSNFUG00015000783
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539921.1 (52921338..52924680)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr02 NC_029650.1 (58127437..58130705)

NW_026539921.1Genomic Context describing neighboring genes Neighboring gene proline-rich coiled-coil 2B Neighboring gene uncharacterized LOC107374671 Neighboring gene inactive tyrosine-protein kinase PRAG1 Neighboring gene zinc finger CCHC domain-containing protein 12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endothelial differentiation-related factor 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539921.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    52921338..52924680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015942826.2 → XP_015798312.1  endothelial differentiation-related factor 1 homolog

    UniProtKB/TrEMBL
    A0A1A7ZF13, A0A8C6KA92
    Related
    ENSNFUP00015001319.1
    Conserved Domains (2) summary
    cl26727
    Location:77 → 144
    aMBF1; Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis]
    pfam08523
    Location:5 → 71
    MBF1; Multiprotein bridging factor 1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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