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RARA retinoic acid receptor alpha [ Coturnix japonica (Japanese quail) ]

Gene ID: 107325261, updated on 14-Mar-2024

Summary

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Gene symbol
RARA
Gene description
retinoic acid receptor alpha
See related
Ensembl:ENSCJPG00005002716
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Also known as
RARa-1; RARg-2
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 27
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 27 NC_029542.1 (4078077..4090819)

Chromosome 27 - NC_029542.1Genomic Context describing neighboring genes Neighboring gene WAS/WASL interacting protein family member 2 Neighboring gene cell division cycle 6 Neighboring gene DNA topoisomerase II alpha Neighboring gene collagen alpha-1(III) chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029542.1 Chromosome 27 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor alpha
Names
retinoic acid receptor alpha-1
retinoic acid receptor gamma-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029542.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    4078077..4090819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015885946.2 → XP_015741432.1  retinoic acid receptor alpha

    UniProtKB/TrEMBL
    A0A8C2SR12
    Related
    ENSCJPP00005002459.1, ENSCJPT00005004530.1
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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