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LOC107320538 ubiquitin carboxyl-terminal hydrolase 42 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107320538, updated on 14-Dec-2023

Summary

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Gene symbol
LOC107320538
Gene description
ubiquitin carboxyl-terminal hydrolase 42
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Also known as
USP42
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Genomic context

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Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 14 NC_029529.1 (931664..940430)

Chromosome 14 - NC_029529.1Genomic Context describing neighboring genes Neighboring gene poly(A)-specific ribonuclease Neighboring gene bifunctional apoptosis regulator Neighboring gene phospholipase A2 group X Neighboring gene zinc finger CCCH-type containing 7A Neighboring gene thioredoxin domain containing 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029529.1 Chromosome 14 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 42
Names
ubiquitin specific peptidase 42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029529.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    931664..940430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032447740.1 → XP_032303631.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X3

    Conserved Domains (1) summary
    cl02553
    Location:30 → 112
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  2. XM_032447739.1 → XP_032303630.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X2

    Conserved Domains (1) summary
    cl02553
    Location:1 → 114
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  3. XM_032447738.1 → XP_032303629.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X1

    Conserved Domains (1) summary
    cl02553
    Location:12 → 129
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  4. XM_032447741.1 → XP_032303632.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X4

    Conserved Domains (1) summary
    cl02553
    Location:12 → 129
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
Nucleotide Protein
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