U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TDP1 tyrosyl-DNA phosphodiesterase 1 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107315238, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TDP1
Gene description
tyrosyl-DNA phosphodiesterase 1
See related
Ensembl:ENSCJPG00005000352
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 5 NC_029520.1 (39635696..39665244)

Chromosome 5 - NC_029520.1Genomic Context describing neighboring genes Neighboring gene forkhead box N3 Neighboring gene uncharacterized LOC116653457 Neighboring gene uncharacterized LOC107315258 Neighboring gene EF-hand calcium binding domain 11 Neighboring gene potassium two pore domain channel subfamily K member 13 Neighboring gene proteasome 26S subunit, ATPase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029520.1 Chromosome 5 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-tyrosyl-DNA phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in single strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tyrosyl-DNA phosphodiesterase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029520.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    39635696..39665244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015865371.2 → XP_015720857.1  tyrosyl-DNA phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2SKN5, A0A8C2SKU3
    Related
    ENSCJPP00005000262.1, ENSCJPT00005000522.1
    Conserved Domains (3) summary
    cd09193
    Location:157 → 326
    PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
    cd09195
    Location:348 → 541
    PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
    pfam06087
    Location:161 → 580
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

  2. XM_032444820.1 → XP_032300711.1  tyrosyl-DNA phosphodiesterase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2SKU3
    Conserved Domains (1) summary
    pfam06087
    Location:161 → 546
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

  3. XM_015865372.2 → XP_015720858.1  tyrosyl-DNA phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2SKN5, A0A8C2SKU3
    Conserved Domains (3) summary
    cd09193
    Location:157 → 326
    PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
    cd09195
    Location:348 → 541
    PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
    pfam06087
    Location:161 → 580
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

  4. XM_015865373.2 → XP_015720859.1  tyrosyl-DNA phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2SKN5, A0A8C2SKU3
    Related
    ENSCJPP00005000268.1, ENSCJPT00005000529.1
    Conserved Domains (3) summary
    cd09193
    Location:157 → 326
    PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
    cd09195
    Location:348 → 541
    PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
    pfam06087
    Location:161 → 580
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.