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ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase [ Coturnix japonica (Japanese quail) ]

Gene ID: 107314811, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH3
Gene description
alkB homolog 3, alpha-ketoglutarate dependent dioxygenase
See related
Ensembl:ENSCJPG00005010819
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 5 NC_029520.1 (19267074..19283409)

Chromosome 5 - NC_029520.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107314833 Neighboring gene hydroxysteroid 17-beta dehydrogenase 12 Neighboring gene chromosome 5 C11orf96 homolog Neighboring gene 1-aminocyclopropane-1-carboxylate synthase homolog (inactive)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029520.1 Chromosome 5 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3
Names
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029520.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    19267074..19283409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015864495.1 → XP_015719981.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

    Conserved Domains (1) summary
    cl21496
    Location:91 → 247
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_015864493.1 → XP_015719979.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    Related
    ENSCJPP00005012718.1, ENSCJPT00005018386.1
    Conserved Domains (1) summary
    cl21496
    Location:91 → 276
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_015864494.1 → XP_015719980.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    Conserved Domains (1) summary
    cl21496
    Location:91 → 275
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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