U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CRY1 cryptochrome circadian regulator 1 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107314547, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CRY1
Gene description
cryptochrome circadian regulator 1
See related
Ensembl:ENSCJPG00005018276
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 1 NC_029516.1 (48995333..49026879, complement)

Chromosome 1 - NC_029516.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107314543 Neighboring gene PWP1 homolog, endonuclein Neighboring gene ankyrin repeat and BTB domain containing 3 Neighboring gene mitochondrial transcription termination factor 2 Neighboring gene transmembrane protein 263

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029516.1 Chromosome 1 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cryptochrome-1
Names
cryptochrome 1
cryptochrome circadian clock 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029516.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    48995333..49026879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015863858.2 → XP_015719344.1  cryptochrome-1 isoform X1

    Conserved Domains (3) summary
    COG0415
    Location:6 → 491
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
    pfam00875
    Location:5 → 166
    DNA_photolyase; DNA photolyase
    pfam03441
    Location:213 → 486
    FAD_binding_7; FAD binding domain of DNA photolyase

  2. XM_015863869.1 → XP_015719355.1  cryptochrome-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2U3Q7
    Related
    ENSCJPP00005023001.1, ENSCJPT00005031525.1
    Conserved Domains (3) summary
    COG0415
    Location:6 → 491
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
    pfam00875
    Location:5 → 166
    DNA_photolyase; DNA photolyase
    pfam03441
    Location:213 → 486
    FAD_binding_7; FAD binding domain of DNA photolyase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.