U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SYNPO2 synaptopodin 2 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107313535, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SYNPO2
Gene description
synaptopodin 2
See related
Ensembl:ENSCJPG00005003736
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 4 NC_029519.1 (49084905..49168581, complement)

Chromosome 4 - NC_029519.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 53 Neighboring gene myozenin 2 Neighboring gene uncharacterized LOC116653372 Neighboring gene SEC24 homolog D, COPII coat complex component Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit Neighboring gene serine protease 12

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029519.1 Chromosome 4 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptopodin-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029519.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    49084905..49168581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015861848.2 → XP_015717334.1  synaptopodin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2STJ6, A0A8C2Y6I4
    Related
    ENSCJPP00005003593.1, ENSCJPT00005006314.1
    Conserved Domains (1) summary
    cd00992
    Location:15 → 93
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_015861849.2 → XP_015717335.1  synaptopodin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2Y6I4
    Conserved Domains (1) summary
    cd00992
    Location:15 → 93
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.