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EXOSC8 exosome component 8 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107308215, updated on 11-Apr-2024

Summary

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Gene symbol
EXOSC8
Gene description
exosome component 8
See related
Ensembl:ENSCJPG00005019889
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 1 NC_029516.1 (154087353..154094717, complement)

Chromosome 1 - NC_029516.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107308238 Neighboring gene uncharacterized LOC107308216 Neighboring gene SPT20 homolog, SAGA complex component Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene SMAD family member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029516.1 Chromosome 1 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: exosome complex component RRP43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029516.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    154087353..154094717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015851950.2 → XP_015707436.2  LOW QUALITY PROTEIN: exosome complex component RRP43

    UniProtKB/TrEMBL
    A0A8C2U9M6
    Related
    ENSCJPP00005025326.1, ENSCJPT00005034465.1
    Conserved Domains (1) summary
    cd11369
    Location:86 → 346
    RNase_PH_RRP43; RRP43 subunit of eukaryotic exosome
Nucleotide Protein
Heading Accession and Version

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