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TRPC1 transient receptor potential cation channel subfamily C member 1 [ Protobothrops mucrosquamatus ]

Gene ID: 107292756, updated on 14-Mar-2024

Summary

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Gene symbol
TRPC1
Gene description
transient receptor potential cation channel subfamily C member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015387600.1 (25213..42395)

NW_015387600.1Genomic Context describing neighboring genes Neighboring gene plastin-1-like Neighboring gene procollagen C-endopeptidase enhancer 2 Neighboring gene progestin and adipoQ receptor family member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015387600 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015387600.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    25213..42395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015821873.1 → XP_015677359.1  short transient receptor potential channel 1 isoform X1

    Conserved Domains (4) summary
    cd00204
    Location:39 → 167
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:36 → 764
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:181 → 239
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:71 → 98
    ANK; ANK repeat [structural motif]

  2. XM_015821874.1 → XP_015677360.1  short transient receptor potential channel 1 isoform X2

    Conserved Domains (4) summary
    cd00204
    Location:39 → 134
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:36 → 730
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:147 → 205
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:71 → 105
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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