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PRPF39 pre-mRNA processing factor 39 [ Protobothrops mucrosquamatus ]

Gene ID: 107290152, updated on 14-Mar-2024

Summary

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Gene symbol
PRPF39
Gene description
pre-mRNA processing factor 39
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015387099.1 (289078..312507)

NW_015387099.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 28 Neighboring gene TOG array regulator of axonemal microtubules 1 Neighboring gene small nucleolar RNA SNORD127 Neighboring gene FKBP prolyl isomerase 3 Neighboring gene FA complementation group M

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015387099 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015387099.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    289078..312507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015819009.2 → XP_015674495.1  pre-mRNA-processing factor 39

    Conserved Domains (3) summary
    smart00386
    Location:370 → 402
    HAT; HAT (Half-A-TPR) repeats
    sd00006
    Location:491 → 525
    TPR; TPR repeat [structural motif]
    pfam13432
    Location:462 → 530
    TPR_16; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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