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LOC107278079 transcription factor ILI3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107278079, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107278079
Gene description
transcription factor ILI3-like
Locus tag
OSNPB_100403800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13720889..13722965, complement)

Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 78A11-like Neighboring gene uncharacterized oxidoreductase At4g09670 Neighboring gene uncharacterized LOC107276393 Neighboring gene transcription factor ILI7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ILI3-like
Names
Os10g0403800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

    Range
    13720889..13722965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758476.2 → XP_015613962.1  transcription factor ILI3-like

    UniProtKB/TrEMBL
    A2Z729, A3C4J6, Q8LNC7
    Conserved Domains (1) summary
    PLN03217
    Location:1 → 87
    PLN03217; transcription factor ATBS1; Provisional
Nucleotide Protein
Heading Accession and Version

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