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Sinme_2962 ATP dependent DNA ligase [ Sinorhizobium meliloti AK83 ]

Gene ID: 10727566, updated on 22-Nov-2014
Gene symbol
Sinme_2962
Gene description
ATP dependent DNA ligase
Locus tag
Sinme_2962
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sinorhizobium meliloti AK83 (strain: AK83)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium
Location:
chromosome: 1
Sequence:
Chromosome: 1; NC_015590.1 (2996153..2997766)

Chromosome 1 - NC_015590.1Genomic Context describing neighboring genes Neighboring gene inosine/uridine-preferring nucleoside hydrolase Neighboring gene putative mRNA 3-end processing factor Neighboring gene PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase Neighboring gene monovalent cation/H+ antiporter subunit 1 Neighboring gene multicomponent Na+/H+ antiporter subunit 3

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
ATP dependent DNA ligase
YP_004550283.1
  • PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal~KEGG: smd:Smed_2804 ATP-dependent DNA ligase

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_015590.1 

    Range
    2996153..2997766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004550283.1 ATP dependent DNA ligase [Sinorhizobium meliloti AK83]

    See proteins identical to YP_004550283.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F6E2R3
    Conserved Domains (4) summary
    cd07972
    Location:406531
    OBF_DNA_ligase_Arch_LigB; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit
    cd07897
    Location:197404
    Adenylation_DNA_ligase_Bac1; Adenylation domain of putative bacterial ATP-dependent DNA ligases
    PRK09247
    Location:1537
    PRK09247; ATP-dependent DNA ligase; Validated
    pfam04675
    Location:2158
    DNA_ligase_A_N; DNA ligase N terminus