These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001256515.1 → NP_001243444.1 UPF0696 protein C11orf68 homolog isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site that causes a frameshift in the central and 3' coding regions, compared to variant 1. The encoded isoform (b) has a distinct and shorter C-terminus, compared to isoform a.
- Source sequence(s)
-
AC122861, BC017542, BE993470, CK622392
- UniProtKB/Swiss-Prot
-
Q8VD62
-
NM_134149.2 → NP_598910.2 UPF0696 protein C11orf68 homolog isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (a).
- Source sequence(s)
-
AV579065, BC017542, CJ181010
- Consensus CDS
-
CCDS29463.2
- UniProtKB/TrEMBL
-
E9QNR6
- UniProtKB/Swiss-Prot
-
Q8VD62
- Related
- ENSMUSP00000125651, OTTMUSP00000048509, ENSMUST00000159759, OTTMUST00000088885
- Conserved Domains (1) summary
-
- pfam08939
Location:83 – 259
Blast Score: 432
- DUF1917; Domain of unknown function (DUF1917)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCm38 C57BL/6J
Genomic
-
NC_000085.6 Reference GRCm38 C57BL/6J
- Range
- 5425144..5427317
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate Mm_Celera
Genomic
-
AC_000041.1 Alternate Mm_Celera
- Range
- 5297479..5299577
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)