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LOC107212851 RNA polymerase II subunit J [ Parus major (Great Tit) ]

Gene ID: 107212851, updated on 14-Dec-2023

Summary

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Gene symbol
LOC107212851
Gene description
RNA polymerase II subunit J
See related
Ensembl:ENSPMJG00000018970
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
Also known as
POLR2J
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Genomic context

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Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 19 NC_031787.1 (3711158..3712833, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 19 NC_029287.1 (3711145..3712833, complement)

Chromosome 19 - NC_031787.1Genomic Context describing neighboring genes Neighboring gene alkB homolog 4, lysine demethylase Neighboring gene leucine rich repeats and WD repeat domain containing 1 Neighboring gene uncharacterized LOC117245308 Neighboring gene ras GTPase-activating protein 4-like Neighboring gene uroplakin-3b-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB11-a
Names
polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031787.1 Reference Parus_major1.1 Primary Assembly

    Range
    3711158..3712833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015646622.2 → XP_015502108.1  DNA-directed RNA polymerase II subunit RPB11-a

    Related
    ENSPMJP00000025940.1, ENSPMJT00000033440.1
    Conserved Domains (1) summary
    cd06926
    Location:14 → 105
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II
Nucleotide Protein
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