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HIC2 HIC ZBTB transcriptional repressor 2 [ Parus major (Great Tit) ]

Gene ID: 107211587, updated on 14-Mar-2024

Summary

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Gene symbol
HIC2
Gene description
HIC ZBTB transcriptional repressor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See HIC2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 15 NC_031784.1 (8184316..8217735)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 15 NC_029284.1 (8183254..8216870)

Chromosome 15 - NC_031784.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107211592 Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene uncharacterized LOC107211593 Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene serpin family D member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 2 protein
Names
hypermethylated in cancer 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031784.1 Reference Parus_major1.1 Primary Assembly

    Range
    8184316..8217735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015643758.3 → XP_015499244.1  hypermethylated in cancer 2 protein

    Conserved Domains (6) summary
    smart00225
    Location:25 → 121
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:514 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:490 → 510
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:531 → 555
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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