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CGNL1 cingulin like 1 [ Parus major (Great Tit) ]

Gene ID: 107209205, updated on 14-Mar-2024

Summary

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Gene symbol
CGNL1
Gene description
cingulin like 1
See related
Ensembl:ENSPMJG00000018460
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 10 NC_031779.1 (6663805..6718661, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 10 NC_029279.1 (6663886..6718664, complement)

Chromosome 10 - NC_031779.1Genomic Context describing neighboring genes Neighboring gene myocardial zonula adherens protein-like Neighboring gene uncharacterized LOC107209209 Neighboring gene uncharacterized LOC109022809 Neighboring gene transcription factor 12 Neighboring gene uncharacterized LOC117244918 Neighboring gene uncharacterized LOC117244919

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cingulin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031779.1 Reference Parus_major1.1 Primary Assembly

    Range
    6663805..6718661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015638544.2 → XP_015494030.1  cingulin-like protein 1 isoform X2

    Conserved Domains (6) summary
    cd00187
    Location:669 → 796
    TOP4c; DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA ...
    pfam00261
    Location:854 → 1079
    Tropomyosin; Tropomyosin
    pfam01496
    Location:1167 → 1249
    V_ATPase_I; V-type ATPase 116kDa subunit family
    pfam09728
    Location:598 → 933
    Taxilin; Myosin-like coiled-coil protein
    cl02219
    Location:569 → 668
    Bap31; B-cell receptor-associated protein 31-like
    cl19219
    Location:791 → 878
    DUF342; Protein of unknown function (DUF342)

  2. XM_033517034.1 → XP_033372925.1  cingulin-like protein 1 isoform X3

    Related
    ENSPMJP00000025190.1, ENSPMJT00000032503.1
    Conserved Domains (1) summary
    pfam01576
    Location:526 → 1190
    Myosin_tail_1; Myosin tail

  3. XM_015638547.3 → XP_015494033.1  cingulin-like protein 1 isoform X1

    Conserved Domains (6) summary
    cd00187
    Location:669 → 796
    TOP4c; DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA ...
    pfam00261
    Location:854 → 1079
    Tropomyosin; Tropomyosin
    pfam01496
    Location:1167 → 1244
    V_ATPase_I; V-type ATPase 116kDa subunit family
    pfam09728
    Location:598 → 933
    Taxilin; Myosin-like coiled-coil protein
    cl02219
    Location:569 → 668
    Bap31; B-cell receptor-associated protein 31-like
    cl19219
    Location:791 → 878
    DUF342; Protein of unknown function (DUF342)

  4. XM_015638545.3 → XP_015494031.1  cingulin-like protein 1 isoform X1

    Conserved Domains (6) summary
    cd00187
    Location:669 → 796
    TOP4c; DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA ...
    pfam00261
    Location:854 → 1079
    Tropomyosin; Tropomyosin
    pfam01496
    Location:1167 → 1244
    V_ATPase_I; V-type ATPase 116kDa subunit family
    pfam09728
    Location:598 → 933
    Taxilin; Myosin-like coiled-coil protein
    cl02219
    Location:569 → 668
    Bap31; B-cell receptor-associated protein 31-like
    cl19219
    Location:791 → 878
    DUF342; Protein of unknown function (DUF342)

RNA

  1. XR_001523461.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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