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LIMS1 LIM zinc finger domain containing 1 [ Parus major (Great Tit) ]

Gene ID: 107206094, updated on 14-Mar-2024

Summary

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Gene symbol
LIMS1
Gene description
LIM zinc finger domain containing 1
See related
Ensembl:ENSPMJG00000011618
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 1 NC_031768.1 (26742698..26809841, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 1 NC_029268.1 (26742698..26809844, complement)

Chromosome 1 - NC_031768.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 138 Neighboring gene E3 SUMO-protein ligase RanBP2 Neighboring gene uncharacterized LOC107206131 Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene sulfotransferase family 1C member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031768.1 Reference Parus_major1.1 Primary Assembly

    Range
    26742698..26809841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015631620.3 → XP_015487106.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  2. XM_015631579.3 → XP_015487065.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

    Conserved Domains (5) summary
    cd09331
    Location:16 → 74
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:77 → 128
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:141 → 191
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:197 → 250
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:258 → 311
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  3. XM_015631604.3 → XP_015487090.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  4. XM_015631594.3 → XP_015487080.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

    Related
    ENSPMJP00000015322.1, ENSPMJT00000020110.1
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  5. XM_015631587.3 → XP_015487073.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

    Related
    ENSPMJP00000015321.1, ENSPMJT00000020109.1
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  6. XM_015631565.2 → XP_015487051.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    Conserved Domains (5) summary
    cd09331
    Location:46 → 104
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:107 → 158
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:171 → 221
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:227 → 280
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:288 → 341
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  7. XM_015631570.2 → XP_015487056.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

    Related
    ENSPMJP00000015319.1, ENSPMJT00000020107.1
    Conserved Domains (5) summary
    cd09331
    Location:46 → 104
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:107 → 158
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:171 → 221
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:227 → 280
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:288 → 341
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  8. XM_019007134.1 → XP_018862679.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

  9. XM_019007137.2 → XP_018862682.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

  10. XM_015631556.2 → XP_015487042.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

    Related
    ENSPMJP00000015320.1, ENSPMJT00000020108.1
    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  11. XM_015631547.3 → XP_015487033.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH
Nucleotide Protein
Heading Accession and Version

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