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FAT4 FAT atypical cadherin 4 [ Parus major (Great Tit) ]

Gene ID: 107203439, updated on 14-Mar-2024

Summary

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Gene symbol
FAT4
Gene description
FAT atypical cadherin 4
See related
Ensembl:ENSPMJG00000007824
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 4 NC_031771.1 (6381755..6505047)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 4 NC_029271.1 (6381755..6505047)

Chromosome 4 - NC_031771.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107203514 Neighboring gene ankyrin repeat domain containing 50 Neighboring gene uncharacterized LOC107202691 Neighboring gene inturned planar cell polarity protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031771.1 Reference Parus_major1.1 Primary Assembly

    Range
    6381755..6505047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015625570.1 → XP_015481056.1  protocadherin Fat 4

    Related
    ENSPMJP00000009828.1, ENSPMJT00000013172.1
    Conserved Domains (5) summary
    cd11304
    Location:2196 → 2291
    Cadherin_repeat; Cadherin tandem repeat domain
    cd00054
    Location:3901 → 3937
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:4016 → 4179
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:3845 → 3896
    EGF; EGF-like domain
    pfam02210
    Location:4289 → 4412
    Laminin_G_2; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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