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Ptcd1 pentatricopeptide repeat domain 1 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107155941, updated on 14-Mar-2024

Summary

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Gene symbol
Ptcd1
Gene description
pentatricopeptide repeat domain 1
See related
Ensembl:ENSMMMG00000005393
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000136.1 (950908..967307)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351287.1 (950914..967307)

NW_026000136.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit f Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene 60S acidic ribosomal protein P1-like Neighboring gene BUD31 homolog Neighboring gene PDGFA associated protein 1 Neighboring gene actin related protein 2/3 complex subunit 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000136.1 Reference marMar

    Range
    950908..967307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015501961.2 → XP_015357447.1  pentatricopeptide repeat-containing protein 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C5YW73
    Related
    ENSMMMP00000005997.1
    Conserved Domains (3) summary
    TIGR00756
    Location:183 → 215
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:182 → 209
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:559 → 602
    PPR_2; PPR repeat family

  2. XM_015501962.2 → XP_015357448.1  pentatricopeptide repeat-containing protein 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C5YW73
    Conserved Domains (3) summary
    TIGR00756
    Location:183 → 215
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:182 → 209
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:559 → 602
    PPR_2; PPR repeat family

  3. XM_048785211.1 → XP_048641168.1  pentatricopeptide repeat-containing protein 1, mitochondrial isoform X2

  4. XM_048785209.1 → XP_048641166.1  pentatricopeptide repeat-containing protein 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C5YW73
Nucleotide Protein
Heading Accession and Version

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