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Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107151350, updated on 14-Mar-2024

Summary

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Gene symbol
Ercc2
Gene description
ERCC excision repair 2, TFIIH core complex helicase subunit
See related
Ensembl:ENSMMMG00000014338
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000205.1 (4907567..4921996)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351255.1 (4907583..4921996)

NW_026000205.1Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 1, endonuclease non-catalytic subunit Neighboring gene RNA polymerase I subunit G Neighboring gene protein phosphatase 1 regulatory subunit 13 like Neighboring gene kinesin light chain 3 Neighboring gene creatine kinase, M-type

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH helicase subunit XPD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000205.1 Reference marMar

    Range
    4907567..4921996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015496705.2 → XP_015352191.1  general transcription and DNA repair factor IIH helicase subunit XPD isoform X1

    UniProtKB/TrEMBL
    A0A8C5ZKT6, A0A8C5ZPU4
    Related
    ENSMMMP00000016256.1
    Conserved Domains (4) summary
    smart00488
    Location:8 → 280
    DEXDc2; DEAD-like helicases superfamily
    smart00491
    Location:542 → 686
    HELICc2; helicase superfamily c-terminal domain
    TIGR00604
    Location:7 → 708
    rad3; DNA repair helicase (rad3)
    pfam06777
    Location:272 → 413
    HBB; Helical and beta-bridge domain

  2. XM_048790699.1 → XP_048646656.1  general transcription and DNA repair factor IIH helicase subunit XPD isoform X2

Nucleotide Protein
Heading Accession and Version

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