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Tsen2 tRNA splicing endonuclease subunit 2 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107150089, updated on 14-Mar-2024

Summary

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Gene symbol
Tsen2
Gene description
tRNA splicing endonuclease subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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See Tsen2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000168.1 (16604101..16636052)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351250.1 (16604151..16635625)

NW_026000168.1Genomic Context describing neighboring genes Neighboring gene peroxisome proliferator activated receptor gamma Neighboring gene uncharacterized LOC107150088 Neighboring gene uncharacterized LOC125611747 Neighboring gene transmembrane protein 126A-like Neighboring gene MKRN2 opposite strand Neighboring gene makorin ring finger protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-intron endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA-type intron splice site recognition and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tRNA-intron endonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-splicing endonuclease subunit Sen2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000168.1 Reference marMar

    Range
    16604101..16636052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015495036.2 → XP_015350522.1  tRNA-splicing endonuclease subunit Sen2 isoform X1

    Conserved Domains (3) summary
    COG1676
    Location:290 → 418
    SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
    pfam01974
    Location:332 → 415
    tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
    pfam02778
    Location:279 → 322
    tRNA_int_endo_N; tRNA intron endonuclease, N-terminal domain

  2. XM_015495037.2 → XP_015350523.1  tRNA-splicing endonuclease subunit Sen2 isoform X1

    Conserved Domains (3) summary
    COG1676
    Location:290 → 418
    SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
    pfam01974
    Location:332 → 415
    tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
    pfam02778
    Location:279 → 322
    tRNA_int_endo_N; tRNA intron endonuclease, N-terminal domain

  3. XM_048787134.1 → XP_048643091.1  tRNA-splicing endonuclease subunit Sen2 isoform X2

Nucleotide Protein
Heading Accession and Version

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