U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ssr1 signal sequence receptor subunit 1 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107149229, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
Ssr1
Gene description
signal sequence receptor subunit 1
See related
Ensembl:ENSMMMG00000014761
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ssr1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999913.1 (4120460..4158899, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351246.1 (4136454..4158871, complement)

NW_025999913.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107149227 Neighboring gene ras responsive element binding protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene cancer antigen 1 Neighboring gene uncharacterized LOC125615569 Neighboring gene RIO kinase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
translocon-associated protein subunit alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_025999913.1 Reference marMar

    Range
    4120460..4158899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048799754.1 → XP_048655711.1  translocon-associated protein subunit alpha isoform X3

  2. XM_048799753.1 → XP_048655710.1  translocon-associated protein subunit alpha isoform X1

  3. XM_015493982.2 → XP_015349468.1  translocon-associated protein subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C5ZN13, A0A8C6EUT7
    Related
    ENSMMMP00000016615.1
    Conserved Domains (1) summary
    pfam03896
    Location:14 → 285
    TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.