U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Atp13a1 ATPase 13A1 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107145389, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
Atp13a1
Gene description
ATPase 13A1
See related
Ensembl:ENSMMMG00000003751
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000241.1 (7659970..7676445, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351234.1 (7659970..7676471, complement)

NW_026000241.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125613758 Neighboring gene lysophosphatidic acid receptor 2 Neighboring gene GEM interacting protein Neighboring gene zinc finger protein 709 Neighboring gene zinc finger protein 670-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type ion transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables membrane protein dislocase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extraction of mislocalized protein from ER membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
endoplasmic reticulum transmembrane helix translocase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000241.1 Reference marMar

    Range
    7659970..7676445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015489321.2 → XP_015344807.1  endoplasmic reticulum transmembrane helix translocase isoform X1

    UniProtKB/TrEMBL
    A0A8C5YWA8
    Related
    ENSMMMP00000004163.1
    Conserved Domains (5) summary
    COG4087
    Location:828 → 881
    COG4087; Soluble P-type ATPase [General function prediction only]
    TIGR01657
    Location:82 → 1193
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
    pfam00122
    Location:295 → 507
    E1-E2_ATPase; E1-E2 ATPase
    pfam12710
    Location:640 → 870
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:581 → 664
    Cation_ATPase; Cation transport ATPase (P-type)

  2. XM_048795113.1 → XP_048651070.1  endoplasmic reticulum transmembrane helix translocase isoform X3

  3. XM_015489322.2 → XP_015344808.1  endoplasmic reticulum transmembrane helix translocase isoform X2

    UniProtKB/TrEMBL
    A0A8C5YUL4, A0A8C5YWA8
    Related
    ENSMMMP00000004207.1
    Conserved Domains (5) summary
    COG4087
    Location:828 → 881
    COG4087; Soluble P-type ATPase [General function prediction only]
    TIGR01657
    Location:82 → 1170
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
    pfam00122
    Location:295 → 507
    E1-E2_ATPase; E1-E2 ATPase
    pfam12710
    Location:640 → 870
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:581 → 664
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.