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Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107136788, updated on 14-Mar-2024

Summary

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Gene symbol
Ercc3
Gene description
ERCC excision repair 3, TFIIH core complex helicase subunit
See related
Ensembl:ENSMMMG00000020488
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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See Ercc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000037.1 (21881373..21912417, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351215.1 (21885015..21912370, complement)

NW_026000037.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 1 Neighboring gene uncharacterized LOC125619364 Neighboring gene cytochrome P450 27C1 Neighboring gene mitogen-activated protein kinase kinase kinase 2 Neighboring gene uncharacterized LOC125619366

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hair cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH helicase subunit XPB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000037.1 Reference marMar

    Range
    21881373..21912417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015479082.2 → XP_015334568.1  general transcription and DNA repair factor IIH helicase subunit XPB isoform X3

    UniProtKB/TrEMBL
    A0A8C6A3L6
    Related
    ENSMMMP00000023415.1
    Conserved Domains (1) summary
    TIGR00603
    Location:60 → 779
    rad25; DNA repair helicase rad25

  2. XM_015479080.2 → XP_015334566.1  general transcription and DNA repair factor IIH helicase subunit XPB isoform X1

    Conserved Domains (4) summary
    TIGR00603
    Location:1 → 715
    rad25; DNA repair helicase rad25
    pfam04851
    Location:251 → 408
    ResIII; Type III restriction enzyme, res subunit
    pfam13625
    Location:12 → 134
    Helicase_C_3; Helicase conserved C-terminal domain
    pfam16203
    Location:432 → 675
    ERCC3_RAD25_C; ERCC3/RAD25/XPB C-terminal helicase

  3. XM_015479081.2 → XP_015334567.1  general transcription and DNA repair factor IIH helicase subunit XPB isoform X2

    Conserved Domains (4) summary
    TIGR00603
    Location:67 → 786
    rad25; DNA repair helicase rad25
    pfam04851
    Location:322 → 479
    ResIII; Type III restriction enzyme, res subunit
    pfam13625
    Location:83 → 205
    Helicase_C_3; Helicase conserved C-terminal domain
    pfam16203
    Location:503 → 746
    ERCC3_RAD25_C; ERCC3/RAD25/XPB C-terminal helicase
Nucleotide Protein
Heading Accession and Version

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