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THUMPD3 THUMP domain containing 3 [ Gekko japonicus ]

Gene ID: 107122226, updated on 14-Mar-2024

Summary

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Gene symbol
THUMPD3
Gene description
THUMP domain containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015175358.1 (817844..829805)

NW_015175358.1Genomic Context describing neighboring genes Neighboring gene receptor-transporting protein 2-like Neighboring gene receptor-transporting protein 3-like Neighboring gene interleukin 1 receptor associated kinase 2 Neighboring gene von Hippel-Lindau tumor suppressor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015175358.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015175358.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    817844..829805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015425257.1 → XP_015280743.1  THUMP domain-containing protein 3

    Conserved Domains (2) summary
    cd11715
    Location:42 → 296
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:303 → 487
    UPF0020; Putative RNA methylase family UPF0020

  2. XM_015425258.1 → XP_015280744.1  THUMP domain-containing protein 3

    Conserved Domains (2) summary
    cd11715
    Location:42 → 296
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:303 → 487
    UPF0020; Putative RNA methylase family UPF0020
Nucleotide Protein
Heading Accession and Version

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