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RBM25 RNA binding motif protein 25 [ Gekko japonicus ]

Gene ID: 107117900, updated on 14-Mar-2024

Summary

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Gene symbol
RBM25
Gene description
RNA binding motif protein 25
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015172002.1 (1483679..1520370, complement)

NW_015172002.1Genomic Context describing neighboring genes Neighboring gene papilin, proteoglycan like sulfated glycoprotein Neighboring gene presenilin 1 Neighboring gene zinc finger FYVE-type containing 1 Neighboring gene DDB1 and CUL4 associated factor 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015172002.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015172002.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    1483679..1520370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015420079.1 → XP_015275565.1  RNA-binding protein 25 isoform X3

    Conserved Domains (2) summary
    smart00311
    Location:735 → 808
    PWI; PWI, domain in splicing factors
    cd12446
    Location:88 → 170
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins

  2. XM_015420076.1 → XP_015275562.1  RNA-binding protein 25 isoform X1

    Conserved Domains (3) summary
    smart00311
    Location:753 → 826
    PWI; PWI, domain in splicing factors
    cd12446
    Location:88 → 170
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
    cl02488
    Location:509 → 566
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  3. XM_015420080.1 → XP_015275566.1  RNA-binding protein 25 isoform X4

    Conserved Domains (2) summary
    smart00311
    Location:735 → 808
    PWI; PWI, domain in splicing factors
    cd12446
    Location:88 → 170
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins

  4. XM_015420078.1 → XP_015275564.1  RNA-binding protein 25 isoform X2

    Conserved Domains (3) summary
    smart00311
    Location:753 → 826
    PWI; PWI, domain in splicing factors
    cd12446
    Location:88 → 170
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
    cl02488
    Location:509 → 566
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
Nucleotide Protein
Heading Accession and Version

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