U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LDB1 LIM domain binding 1 [ Gekko japonicus ]

Gene ID: 107114459, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LDB1
Gene description
LIM domain binding 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015169174.1 (1100809..1161619)

NW_015169174.1Genomic Context describing neighboring genes Neighboring gene ligand dependent nuclear receptor corepressor Neighboring gene PPARG related coactivator 1 Neighboring gene prominin-1-A-like Neighboring gene HPS6 biogenesis of lysosomal organelles complex 2 subunit 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015169174.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables LIM domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LIM domain-binding protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015169174.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    1100809..1161619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015415956.1 → XP_015271442.1  LIM domain-binding protein 1 isoform X1

    Conserved Domains (2) summary
    pfam01803
    Location:70 → 271
    LIM_bind; LIM-domain binding protein
    pfam17916
    Location:336 → 364
    LID; LIM interaction domain (LID)

  2. XM_015415957.1 → XP_015271443.1  LIM domain-binding protein 1 isoform X2

    Conserved Domains (2) summary
    pfam01803
    Location:70 → 271
    LIM_bind; LIM-domain binding protein
    pfam17916
    Location:334 → 362
    LID; LIM interaction domain (LID)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.