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DPF2 double PHD fingers 2 [ Gekko japonicus ]

Gene ID: 107111053, updated on 14-Mar-2024

Summary

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Gene symbol
DPF2
Gene description
double PHD fingers 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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See DPF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015166439.1 (1003161..1037410)

NW_015166439.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase alpha 2, accessory subunit Neighboring gene CDC42 effector protein 2 Neighboring gene cholinergic receptor muscarinic 1 Neighboring gene solute carrier family 22 member 6-A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015166439.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ubi-d4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015166439.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    1003161..1037410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015411952.1 → XP_015267438.1  zinc finger protein ubi-d4 isoform X1

    Conserved Domains (3) summary
    cd15530
    Location:347 → 392
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:290 → 345
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:16 → 82
    Requiem_N; N-terminal domain of DPF2/REQ

  2. XM_015411953.1 → XP_015267439.1  zinc finger protein ubi-d4 isoform X2

    Conserved Domains (3) summary
    cd15530
    Location:346 → 391
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:289 → 344
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:16 → 82
    Requiem_N; N-terminal domain of DPF2/REQ

  3. XM_015411956.1 → XP_015267442.1  zinc finger protein ubi-d4 isoform X5

    Conserved Domains (3) summary
    cd15530
    Location:333 → 378
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:276 → 331
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:16 → 82
    Requiem_N; N-terminal domain of DPF2/REQ

  4. XM_015411957.1 → XP_015267443.1  zinc finger protein ubi-d4 isoform X6

    Conserved Domains (3) summary
    cd15530
    Location:332 → 377
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:275 → 330
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:16 → 82
    Requiem_N; N-terminal domain of DPF2/REQ

  5. XM_015411954.1 → XP_015267440.1  zinc finger protein ubi-d4 isoform X3

    Conserved Domains (3) summary
    cd15530
    Location:344 → 389
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:287 → 342
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 79
    Requiem_N; N-terminal domain of DPF2/REQ

  6. XM_015411955.1 → XP_015267441.1  zinc finger protein ubi-d4 isoform X4

    Conserved Domains (3) summary
    cd15530
    Location:343 → 388
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:286 → 341
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 79
    Requiem_N; N-terminal domain of DPF2/REQ

  7. XM_015411958.1 → XP_015267444.1  zinc finger protein ubi-d4 isoform X7

    Conserved Domains (3) summary
    cd15530
    Location:330 → 375
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:273 → 328
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 79
    Requiem_N; N-terminal domain of DPF2/REQ

  8. XM_015411959.1 → XP_015267445.1  zinc finger protein ubi-d4 isoform X8

    Conserved Domains (3) summary
    cd15530
    Location:329 → 374
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:272 → 327
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 79
    Requiem_N; N-terminal domain of DPF2/REQ
Nucleotide Protein
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