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CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Gekko japonicus ]

Gene ID: 107106773, updated on 14-Mar-2024

Summary

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Gene symbol
CTR9
Gene description
CTR9 homolog, Paf1/RNA polymerase II complex component
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015163135.1 (128992..166672, complement)

NW_015163135.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene lymphatic vessel endothelial hyaluronan receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015163135.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase-associated protein CTR9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015163135.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    128992..166672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015406964.1 → XP_015262450.1  RNA polymerase-associated protein CTR9 homolog

    Conserved Domains (8) summary
    TIGR02795
    Location:310 → 420
    tol_pal_ybgF; tol-pal system protein YbgF
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:165 → 228
    TPR_11; TPR repeat
    pfam13424
    Location:498 → 563
    TPR_12; Tetratricopeptide repeat
    pfam14559
    Location:691 → 750
    TPR_19; Tetratricopeptide repeat
    pfam14797
    Location:1043 → 1181
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15376
    Location:1065 → 1178
    DUF4603; Domain of unknown function (DUF4603)
    cl23720
    Location:828 → 890
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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