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dennd4b DENN domain containing 4B [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107104289, updated on 2-Nov-2023

Summary

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Gene symbol
dennd4b
Gene description
DENN domain containing 4B
See related
Ensembl:ENSCVAG00000013963
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015152132.1 (23966..51957)

NW_015152132.1Genomic Context describing neighboring genes Neighboring gene dyslexia-associated protein KIAA0319 homolog Neighboring gene aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015152132.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DENN domain-containing protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015152132.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    23966..51957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015404261.1 → XP_015259747.1  DENN domain-containing protein 4B

    UniProtKB/TrEMBL
    A0A3Q2D009
    Related
    ENSCVAP00000011603.1, ENSCVAT00000018620.1
    Conserved Domains (6) summary
    smart00801
    Location:562 → 635
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:181 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    TIGR00756
    Location:807 → 841
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:806 → 835
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:312 → 496
    DENN; DENN (AEX-3) domain
    pfam13041
    Location:804 → 844
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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