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hacl1 2-hydroxyacyl-CoA lyase 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107103875, updated on 14-Mar-2024

Summary

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Gene symbol
hacl1
Gene description
2-hydroxyacyl-CoA lyase 1
See related
Ensembl:ENSCVAG00000012437
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150455.1 (685056..695221)

NW_015150455.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 9b Neighboring gene ankyrin repeat domain 28b Neighboring gene collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150455.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid alpha-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-hydroxyacyl-CoA lyase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150455.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    685056..695221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015403753.1 → XP_015259239.1  2-hydroxyacyl-CoA lyase 1

    UniProtKB/TrEMBL
    A0A3Q2E3F3
    Related
    ENSCVAP00000026687.1, ENSCVAT00000016965.1
    Conserved Domains (4) summary
    cd07035
    Location:8 → 160
    TPP_PYR_POX_like; Pyrimidine (PYR) binding domain of POX and related proteins
    PRK09259
    Location:5 → 552
    PRK09259; putative oxalyl-CoA decarboxylase; Validated
    cd02004
    Location:367 → 550
    TPP_BZL_OCoD_HPCL; Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL ...
    pfam00205
    Location:193 → 322
    TPP_enzyme_M; Thiamine pyrophosphate enzyme, central domain
Nucleotide Protein
Heading Accession and Version

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