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tbc1d25 TBC1 domain family, member 25 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107101275, updated on 14-Mar-2024

Summary

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Gene symbol
tbc1d25
Gene description
TBC1 domain family, member 25
See related
Ensembl:ENSCVAG00000013339
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151528.1 (90702..111008)

NW_015151528.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 22 Neighboring gene NADH:ubiquinone oxidoreductase subunit B11 Neighboring gene mitochondrial carrier 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151528.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TBC1 domain family member 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151528.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    90702..111008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015400128.1 → XP_015255614.1  TBC1 domain family member 25 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2E4R9
    Related
    ENSCVAP00000027211.1, ENSCVAT00000018006.1
    Conserved Domains (2) summary
    smart00164
    Location:199 → 425
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cl02720
    Location:10 → 90
    PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...

  2. XM_015400129.1 → XP_015255615.1  TBC1 domain family member 25 isoform X2

    Conserved Domains (1) summary
    smart00164
    Location:130 → 356
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
Nucleotide Protein
Heading Accession and Version

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