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ch25h cholesterol 25-hydroxylase [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107099843, updated on 14-Mar-2024

Summary

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Gene symbol
ch25h
Gene description
cholesterol 25-hydroxylase
See related
Ensembl:ENSCVAG00000019034
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151365.1 (43734..45371)

NW_015151365.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107099839 Neighboring gene NOC3-like DNA replication regulator Neighboring gene actin alpha 2, smooth muscle Neighboring gene STAM binding protein-like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151365.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-4 methylsterol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid hydroxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cholesterol 25-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151365.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    43734..45371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015398117.1 → XP_015253603.1  cholesterol 25-hydroxylase

    UniProtKB/TrEMBL
    A0A3Q2EFF0
    Related
    ENSCVAP00000030474.1, ENSCVAT00000024433.1
    Conserved Domains (2) summary
    COG3000
    Location:79 → 251
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:111 → 246
    FA_hydroxylase; Fatty acid hydroxylase superfamily
Nucleotide Protein
Heading Accession and Version

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