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stn1 STN1 subunit of CST complex [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107099312, updated on 14-Mar-2024

Summary

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Gene symbol
stn1
Gene description
STN1 subunit of CST complex
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Also known as
obfc1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151311.1 (112538..126984, complement)

NW_015151311.1Genomic Context describing neighboring genes Neighboring gene SH3 and PX domain-containing protein 2A-like Neighboring gene STE20-like kinase b Neighboring gene collagen, type XVII, alpha 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151311.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CST complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CST complex subunit STN1
Names
STN1, CST complex subunit
oligonucleotide/oligosaccharide binding fold containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151311.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    112538..126984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015397369.1 → XP_015252855.1  CST complex subunit STN1

    UniProtKB/TrEMBL
    A0A3Q2DBV4
    Conserved Domains (2) summary
    cd04483
    Location:58 → 162
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:164 → 299
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
Nucleotide Protein
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