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sorl1 sortilin-related receptor, L(DLR class) A repeats containing [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107095919, updated on 14-Mar-2024

Summary

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Gene symbol
sorl1
Gene description
sortilin-related receptor, L(DLR class) A repeats containing
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151037.1 (638901..712849, complement)

NW_015151037.1Genomic Context describing neighboring genes Neighboring gene NAD(P)H dehydrogenase [quinone] 1-like Neighboring gene uncharacterized LOC107095921

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151037.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sortilin-related receptor
Names
sortilin related receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151037.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    638901..712849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015392290.1 → XP_015247776.1  sortilin-related receptor

    Conserved Domains (7) summary
    smart00192
    Location:730 → 762
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:356 → 395
    LY; Low-density lipoprotein-receptor YWTD domain
    cd00063
    Location:1351 → 1427
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00112
    Location:690 → 724
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cd05819
    Location:322 → 363
    NHL; NHL repeat [structural motif]
    pfam15901
    Location:120 → 285
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal
    cl18310
    Location:297 → 400
    NHL; NHL repeat unit of beta-propeller proteins
Nucleotide Protein
Heading Accession and Version

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