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znf253 zinc finger protein 253 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107095295, updated on 2-Nov-2023

Summary

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Gene symbol
znf253
Gene description
zinc finger protein 253
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150988.1 (188317..198602, complement)

NW_015150988.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 2 homolog Neighboring gene zinc finger protein 2 homolog Neighboring gene zinc finger protein OZF-like Neighboring gene zinc finger protein 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150988.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 253

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150988.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    188317..198602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015391315.1 → XP_015246801.1  zinc finger protein 253

    Conserved Domains (3) summary
    COG5048
    Location:188 → 376
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:253 → 273
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:293 → 318
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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